· Delarue web servers
· PDB_Hydro Flow chart
· Modify PDB structures
  · Fix missing side chains
  · Flip HNQ side chains
  · Refine sidechain torsions
  · Single point mutations
  · Change sequence (decorate)
  · Generate loops
· Solvate PDB structures
  · Assign charges (PQR)
  · Solvate using GPBL
  · Place Waters
  · All in one
· NEW !!! AQUASOL !!!
  · Run AquaSol
· References
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References

Electrostatics

Model-building and side-chain positioning

  • Koehl P., Orland H. and Delarue M.
    Adapting Poisson-Boltzmann to the self-consistent mean field theory: Application to protein side-chain modeling.
    J. Chem. Phys. (2011) 135:055104.
  • On line.



  Marc Delarue http://lorentz.dynstr.pasteur.fr
Page last modified 13:12 August 22, 2011.