· Delarue web servers
· Nomad Flow-chart
· Normal Mode calculation
  · Examples (Movies)
  · Submit a job (from PDB file)
  · Split trajectory (for MR)
  · Generate decoys (MixMod)
  · Elastic Energy (Perturb. Anal.)
· Overlap coefficients
  · Submit a job
  · Include Profit step
· X-Ray refinement
  · Standard refinement
  · Screening Mol. Repl. Solns.
· EM refinement
  · Documents/Examples
  · Get Structure Factors
  · Submit a job (no NCS)
  · Submit job with NCS
· Docking refinement
  · Submit a job (refinement)
  · Submit a job (scanning)
· Force field methods
  · Energy minimization
  · Gromacs NMA
· References
· Homes/Links
· Job queue status

Homes of authors

Visit Marc Delarue web site.

Visit Erik Lindahl web site.

Related links

Visit Yves-Henri Sanejouand web site: his RTB code may be downloaded from here.

Visit Karsten Suhre web site and his ElNemo web site for on-line Normal Mode calculations.
See also NORMA for flexible fitting in EM maps.

Visit Patrice Koehl web site in particular for side-chain atoms and missing main-chain atoms reconstruction from just a CA-trace.

Visit Konrad Hinsen web site and his MMTK Tools.

Visit Viper web site at Scripps for structures of viral particles.

Other site(s) of interest

Visit Solvate to mutate and solvate a protein.

Visit Webnm@ for Normal Mode calculations in Norway.

Visit AD-ENM for Normal Mode calculations (NIH).

Visit ANM from I. Bahar's lab for Normal Mode calculations with Jmol animations.




  Marc Delarue http://lorentz.dynstr.pasteur.fr
Page last modified 18:02 January 24, 2006.