· Delarue web servers
· Nomad Flow-chart
· Normal Mode calculation
  · Examples (Movies)
  · Submit a job (from PDB file)
  · Elastic Energy (Perturb. Anal.)
· Overlap coefficients
  · Include Profit step
· Molecular Replacement
  · Split trajectory (for MR)
  · Generate decoys (MixMod)
· X-Ray refinement
  · Standard refinement
  · Screening Mol. Repl. Solns.
· EM refinement
  · Documents/Examples
  · Get Structure Factors
  · Submit a job (no NCS)
  · Submit job with NCS
· Docking refinement
  · Submit a job (refinement)
  · Submit a job (scanning)
· Force field methods
  · Energy minimization
  · Gromacs NMA
· References
· Homes/Links
· Job queue status

Homes of authors

Visit Marc Delarue web site.

Visit Erik Lindahl web site.

Related links

Visit Yves-Henri Sanejouand web site: his RTB code may be downloaded from here.

Visit Karsten Suhre web site and his ElNemo web site for on-line Normal Mode calculations.
See also NORMA for flexible fitting in EM maps.

Visit Patrice Koehl web site in particular for side-chain atoms and missing main-chain atoms reconstruction from just a CA-trace.

Visit Sergey Grudinin web site in particular for Non-Linear RTB Normal Modes NOLB.

Visit Konrad Hinsen web site and his MMTK Tools.

Visit Viper web site at Scripps for structures of viral particles.

Other site(s) of interest

Visit Solvate to mutate and solvate a protein.

Visit Webnm@ for Normal Mode calculations in Norway.

Visit AD-ENM for Normal Mode calculations (NIH).

Visit ANM from I. Bahar's lab for Normal Mode calculations with Jmol animations.

  Marc Delarue http://lorentz.dynstr.pasteur.fr
Page last modified 18:02 January 24, 2006.