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· DD-NMA
  · Introduction
· Coarse-Graining
  · Protein CG
  · DNA/RNA CG
· Non-constant Kij
  · Hessian Proj. CG
  · Decimation CG
· New NMA Models
  · Go-like Energy NMA
  · Delaunay + classic NMA
· References
· Links
· Job queue status
· Distances Bridges

Construct a coarse-grained representation of a Protein from a PDB file

Here we just select one bead for the main-chain (CA) and one or two beads (CG1,CG2) for the side chain, depending on the side-chain (see M. Zacharias for instance).

Your email adress: (Recommended, for notification)


Job title: (Only alphanumerical characters - no space)


PDB file to be checked Ex: Example



Input data formats

  • The job title is just for your own identification, but note that it will show up in the public job queue (but your results will not be public).

  • The coordinate file should be in PDB format, with only a single structure (no multiple models). Atoms marked with alternate residue conformation flags will be removed. Heteroatoms (HETATM) will be copied to the output file.




  Marc Delarue http://lorentz.dynstr.pasteur.fr
Page last modified 15:41 May 08, 2017.