· Delarue web servers
· DD-NMA
  · Introduction
· Coarse-Graining
  · Protein CG
  · DNA/RNA CG
· Non-constant Kij
  · Hessian Proj. CG
  · Decimation CG
· New NMA Models
  · Go-like Energy NMA
  · Delaunay + classic NMA
· References
· Links
· Job queue status
· Distances Bridges

Welcome to the new DD-NMA website


This site provides tools for calculating Normal Modes using Coarse-Grained Models of Proteins and Nucleic acids.

New variants of the ENM-NMA method are proposed that involve:
-rigourous projection coarse-graining (Hessian projection)
-progressive elimination coarse-graining (Decimation)
-a new way to define neighbours (Delaunay tessalation)
-additional elastic energy terms V_tor and V_dihed (Go-like Model)

Key References can be found here:
Patrice Koehl's method and code for NMA and Delaunay.

2-3 beads per amino-acid: simplified representation of proteins-acids.

6-7 beads per nucleotide: simplified representation of nucleic acids.

This is a Beta version web site - still under development....




  Marc Delarue http://lorentz.dynstr.pasteur.fr
Page last modified 22:51 May 07, 2017.