· Introduction
· NOMAD-Ref server
· PDB_Hydro server
· MinActionPath server
· References
· Homes & Links
· Job queue status
· Main site

News

2011

AquaSAXS, a web-based software to calculate SAXS spectra from PDB coordinates, including the solvent density predicted by AquaSol, is now available on-line. See article.
The corresponding software Aquasol to calculate solvation maps is also on line (see article).

2010

A meeting in I. Pasteur of the France-Stanford Exchange Program (September)

2009

MinActionPath was updated (NewPath) to accept up to 10,000 atoms thanks to Patrice Koehl (UC Davis, USA).

2008

The dipolar solvent model was described in Biophysical Journal (coll. H. Orland).
The web server and new implementation due to P. Koehl (AquaSol) is here.

2007

MinActionPath web server: Generate the most probable trajectory between two known structural forms of the same macromolecule (Franklin et al., 2007).

2006

NOMAD-Ref web server
Normal Mode Analysis, Deformation and Refinement PDB_Hydro web server
Mutation & Solvation: Dipolar Poisson-Boltzmannn

Introduction

This site provides online servers for algorithms such as normal mode calculation, structural refinement, solvation, mutation and transition path calculation.
The primary application is for biological macromolecules like proteins or DNA or complexes thereof.

Marc Delarue

http://lorentz.immstr.pasteur.fr